Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm12783-201ENSMUST00000121425 397 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm17798-201ENSMUST00000182282 1035 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm18198-201ENSMUST00000204986 1551 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 CT009536.2-201ENSMUST00000225370 665 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 CT025602.2-201ENSMUST00000226553 772 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.09□□□□□ -0.31
Col6a1Q04857 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Col6a1Q04857 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.09□□□□□ -0.31
Col6a1Q04857 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col6a1Q04857 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col6a1Q04857 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Col6a1Q04857 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Col6a1Q04857 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm7104-201ENSMUST00000179741 2532 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm13910-201ENSMUST00000121752 1428 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm12218-201ENSMUST00000117666 399 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm11422-201ENSMUST00000118925 1103 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm24398-201ENSMUST00000157870 109 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col6a1Q04857 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm3318-201ENSMUST00000217604 1183 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 CT030653.1-201ENSMUST00000224382 1279 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 AC136376.2-201ENSMUST00000228819 490 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm25007-201ENSMUST00000083808 133 ntBASIC13.08□□□□□ -0.32
Col6a1Q04857 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Col6a1Q04857 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Col6a1Q04857 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm19817-201ENSMUST00000199764 2132 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms