Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm15881-201ENSMUST00000148792 942 ntBASIC13.71□□□□□ -0.21
Traf1P39428 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Traf1P39428 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Traf1P39428 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC13.71□□□□□ -0.21
Traf1P39428 Gm5714-201ENSMUST00000197343 566 ntBASIC13.71□□□□□ -0.21
Traf1P39428 Mir7686-201ENSMUST00000200604 57 ntBASIC13.71□□□□□ -0.21
Traf1P39428 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Traf1P39428 Gm29787-201ENSMUST00000222129 849 ntBASIC13.71□□□□□ -0.21
Traf1P39428 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13.71□□□□□ -0.21
Traf1P39428 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Traf1P39428 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC13.71□□□□□ -0.21
Traf1P39428 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Traf1P39428 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC13.71□□□□□ -0.21
Traf1P39428 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Traf1P39428 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.71□□□□□ -0.22
Traf1P39428 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Traf1P39428 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Traf1P39428 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Traf1P39428 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
Traf1P39428 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.71□□□□□ -0.22
Traf1P39428 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Traf1P39428 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Traf1P39428 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Traf1P39428 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.22
Traf1P39428 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Gm13916-201ENSMUST00000117368 628 ntBASIC13.7□□□□□ -0.22
Traf1P39428 Gm12036-201ENSMUST00000120008 530 ntBASIC13.7□□□□□ -0.22
Traf1P39428 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Gm7666-201ENSMUST00000146631 819 ntBASIC13.7□□□□□ -0.22
Traf1P39428 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Gm26047-201ENSMUST00000157308 113 ntBASIC13.7□□□□□ -0.22
Traf1P39428 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Traf1P39428 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Gm26047-202ENSMUST00000198840 115 ntBASIC13.7□□□□□ -0.22
Traf1P39428 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
Traf1P39428 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Gm10179-201ENSMUST00000086233 688 ntBASIC13.7□□□□□ -0.22
Traf1P39428 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.7□□□□□ -0.22
Traf1P39428 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Traf1P39428 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Traf1P39428 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.69□□□□□ -0.22
Traf1P39428 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.69□□□□□ -0.22
Traf1P39428 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm4310-201ENSMUST00000177847 889 ntBASIC13.69□□□□□ -0.22
Traf1P39428 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC13.69□□□□□ -0.22
Traf1P39428 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.69□□□□□ -0.22
Traf1P39428 Gm17831-201ENSMUST00000205579 900 ntBASIC13.69□□□□□ -0.22
Traf1P39428 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC13.69□□□□□ -0.22
Traf1P39428 Gm45770-201ENSMUST00000212105 616 ntBASIC13.69□□□□□ -0.22
Traf1P39428 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.69□□□□□ -0.22
Traf1P39428 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Traf1P39428 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms