Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gm18626-201ENSMUST00000221512 1409 ntBASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Pcdh1F7BJK1 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Pcdh1F7BJK1 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Dctn4-202ENSMUST00000223590 1530 ntBASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm25043-201ENSMUST00000158604 212 ntBASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm6114-201ENSMUST00000182472 968 ntBASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm9192-201ENSMUST00000183221 985 ntBASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Gm9728-201ENSMUST00000200197 1055 ntBASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Pcdh1F7BJK1 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Hnrnph2-203ENSMUST00000074950 2426 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm42627-201ENSMUST00000197347 224 ntBASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm807-202ENSMUST00000224929 408 ntBASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Lect2-202ENSMUST00000225183 823 ntBASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Thoc7-209ENSMUST00000225325 765 ntBASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Gm10254-201ENSMUST00000052888 867 ntBASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Pcdh1F7BJK1 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms