Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Gm11660-201ENSMUST00000120955 412 ntBASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Gm12566-201ENSMUST00000121479 359 ntBASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Gm21811-201ENSMUST00000096485 930 ntBASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.15□□□□□ -0.47
Vps28Q9D1C8 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Vps28Q9D1C8 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Vps28Q9D1C8 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 AC159308.2-201ENSMUST00000213592 2325 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm11450-201ENSMUST00000121144 333 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Mir3102-201ENSMUST00000175555 104 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Mir6979-201ENSMUST00000183927 56 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm7848-201ENSMUST00000210739 718 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Vps28Q9D1C8 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm14058-201ENSMUST00000116082 735 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm13035-201ENSMUST00000117496 342 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm12857-201ENSMUST00000117678 592 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm15004-201ENSMUST00000119192 630 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm19287-201ENSMUST00000203190 358 ntBASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms