Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm36957-201ENSMUST00000192982 2824 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm16296-201ENSMUST00000159905 325 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm5523-201ENSMUST00000180415 997 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC13.29□□□□□ -0.28
Smc1aQ9CU62 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Smc1aQ9CU62 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm12286-201ENSMUST00000119246 1002 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm14832-201ENSMUST00000121289 322 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm6963-201ENSMUST00000147879 379 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm24749-201ENSMUST00000157838 343 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm5070-201ENSMUST00000177599 862 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm32999-201ENSMUST00000192693 562 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm18730-201ENSMUST00000218038 343 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm29787-201ENSMUST00000222129 849 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Smc1aQ9CU62 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Smc1aQ9CU62 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smc1aQ9CU62 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Smc1aQ9CU62 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms