Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col11a1Q61245 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 AC137950.2-202ENSMUST00000227150 1635 ntBASIC13□□□□□ -0.33
Col11a1Q61245 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC13□□□□□ -0.33
Col11a1Q61245 Dcaf12-201ENSMUST00000030145 3442 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col11a1Q61245 Gm13700-201ENSMUST00000118624 1128 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm9625-201ENSMUST00000180422 955 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm33707-201ENSMUST00000195135 569 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm38094-201ENSMUST00000195864 2978 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm11993-201ENSMUST00000121861 820 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm5342-201ENSMUST00000181982 1003 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm19927-201ENSMUST00000185792 781 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm45481-201ENSMUST00000209717 877 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm18001-201ENSMUST00000212023 688 ntBASIC12.99□□□□□ -0.33
Col11a1Q61245 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC12.99□□□□□ -0.33
Col11a1Q61245 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col11a1Q61245 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.98□□□□□ -0.33
Col11a1Q61245 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col11a1Q61245 AC154354.1-203ENSMUST00000225565 1364 ntBASIC12.98□□□□□ -0.33
Col11a1Q61245 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.98□□□□□ -0.33
Col11a1Q61245 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Gm8152-201ENSMUST00000120842 637 ntBASIC12.98□□□□□ -0.33
Col11a1Q61245 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Gm24294-201ENSMUST00000158295 277 ntBASIC12.98□□□□□ -0.33
Col11a1Q61245 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col11a1Q61245 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col11a1Q61245 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col11a1Q61245 Gm5740-201ENSMUST00000211003 1857 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC12.97□□□□□ -0.33
Col11a1Q61245 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col11a1Q61245 Gm25872-201ENSMUST00000177784 100 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 Pigx-212ENSMUST00000215073 765 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col11a1Q61245 AC134601.2-201ENSMUST00000221071 130 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 CT010486.3-201ENSMUST00000224555 811 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col11a1Q61245 Gm9244-201ENSMUST00000056767 2129 ntBASIC12.97□□□□□ -0.33
Col11a1Q61245 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms