Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm44506-201ENSMUST00000206278 965 ntBASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm27194-201ENSMUST00000175753 2936 ntBASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Tsc22d1-207ENSMUST00000140251 670 ntTSL 2 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC20.63■□□□□ 0.89
Trim41Q5NCC3 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 AC153929.1-201ENSMUST00000219009 303 ntBASIC20.63■□□□□ 0.89
Trim41Q5NCC3 CT573086.4-201ENSMUST00000226729 342 ntBASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Gm44152-201ENSMUST00000205007 1691 ntBASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim41Q5NCC3 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Gm18367-201ENSMUST00000176139 600 ntBASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Trdn-202ENSMUST00000217779 1182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Gm18198-201ENSMUST00000204986 1551 ntBASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Gm27196-201ENSMUST00000184787 2582 ntBASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim41Q5NCC3 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm25509-201ENSMUST00000116985 106 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm5380-201ENSMUST00000119296 2136 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm9192-201ENSMUST00000183221 985 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm37852-201ENSMUST00000193027 350 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm6108-201ENSMUST00000208365 367 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 AC105408.1-201ENSMUST00000227771 802 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Gm6304-201ENSMUST00000096579 447 ntBASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim41Q5NCC3 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms