Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm14028-201ENSMUST00000117434 479 ntBASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm27341-201ENSMUST00000183570 106 ntBASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm9797-202ENSMUST00000218003 294 ntBASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Gm807-202ENSMUST00000224929 408 ntBASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.68□□□□□ -0.38
Upf3bQ3ULL6 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gm23596-201ENSMUST00000104304 132 ntBASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gm6114-201ENSMUST00000182472 968 ntBASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gm3332-201ENSMUST00000189337 928 ntBASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Upf3bQ3ULL6 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms