Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm14807-201ENSMUST00000116640 983 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Gm14892-201ENSMUST00000117636 267 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC11.24□□□□□ -0.61
Cdx2P43241 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm9192-201ENSMUST00000183221 985 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC11.24□□□□□ -0.61
Cdx2P43241 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Lgi3-203ENSMUST00000226548 1001 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Cdx2P43241 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Cdx2P43241 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm4900-201ENSMUST00000222046 1628 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm10169-201ENSMUST00000121822 348 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm5621-201ENSMUST00000187303 640 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Gm7504-201ENSMUST00000201449 424 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm18561-201ENSMUST00000206027 804 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 AC114645.1-201ENSMUST00000215831 187 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC11.23□□□□□ -0.61
Cdx2P43241 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.23□□□□□ -0.61
Cdx2P43241 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Cdx2P43241 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm8325-201ENSMUST00000099086 453 ntBASIC11.23□□□□□ -0.61
Cdx2P43241 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdx2P43241 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdx2P43241 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdx2P43241 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdx2P43241 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Cdx2P43241 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdx2P43241 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdx2P43241 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC11.22□□□□□ -0.61
Cdx2P43241 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms