Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cpsf3Q9QXK7 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm28937-201ENSMUST00000185413 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm29400-201ENSMUST00000187208 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm28662-201ENSMUST00000188446 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm28251-201ENSMUST00000188835 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm37318-201ENSMUST00000194325 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm38017-201ENSMUST00000194768 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm37287-201ENSMUST00000195449 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm37793-201ENSMUST00000195548 695 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Spcs1-203ENSMUST00000226374 592 ntBASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Cpsf3Q9QXK7 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Matn2-203ENSMUST00000226766 3252 ntBASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Gm9062-201ENSMUST00000117712 727 ntBASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Gm13263-201ENSMUST00000121271 838 ntBASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cpsf3Q9QXK7 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms