Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm13611-201ENSMUST00000118269 318 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm43378-201ENSMUST00000199336 582 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm18377-201ENSMUST00000215141 607 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm6867-201ENSMUST00000219165 425 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Gm13910-201ENSMUST00000121752 1428 ntBASIC13.18□□□□□ -0.3
Trim47Q8C0E3 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 C130071C03Rik-203ENSMUST00000182788 1368 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim47Q8C0E3 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm37269-201ENSMUST00000193906 1891 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Rubie-203ENSMUST00000227803 2430 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 AC108858.2-201ENSMUST00000228186 1425 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm15207-201ENSMUST00000119259 442 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm6397-201ENSMUST00000161973 1069 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm38117-201ENSMUST00000194653 939 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm2553-201ENSMUST00000215986 605 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm7551-201ENSMUST00000089593 1074 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim47Q8C0E3 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms