Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp47Q8BY87 Gm25076-201ENSMUST00000104098 132 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm14071-201ENSMUST00000117817 509 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm16071-201ENSMUST00000119589 793 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm17826-201ENSMUST00000189720 798 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm10109-202ENSMUST00000206890 1211 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 AC164437.3-201ENSMUST00000228323 347 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm7841-201ENSMUST00000122108 1629 ntBASIC16.65■□□□□ 0.26
Usp47Q8BY87 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC16.65■□□□□ 0.26
Usp47Q8BY87 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC16.64■□□□□ 0.26
Usp47Q8BY87 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC16.64■□□□□ 0.26
Usp47Q8BY87 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 AC135469.1-201ENSMUST00000225984 772 ntBASIC16.64■□□□□ 0.26
Usp47Q8BY87 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Gm9826-201ENSMUST00000029124 1299 ntBASIC16.64■□□□□ 0.26
Usp47Q8BY87 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
Usp47Q8BY87 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm44241-201ENSMUST00000203230 1662 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm15131-201ENSMUST00000119124 595 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm12029-201ENSMUST00000120073 832 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm14585-201ENSMUST00000120713 634 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm8737-201ENSMUST00000122208 642 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC16.64■□□□□ 0.25
Usp47Q8BY87 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm43520-201ENSMUST00000197996 164 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Usp47Q8BY87 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm8342-201ENSMUST00000209839 757 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm18065-201ENSMUST00000221395 526 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Gm18974-201ENSMUST00000221478 1031 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 CT030637.1-201ENSMUST00000228016 669 ntBASIC16.64■□□□□ 0.25
Usp47Q8BY87 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms