Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC13.76□□□□□ -0.21
Traf1P39428 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Gm37835-201ENSMUST00000193305 361 ntBASIC13.76□□□□□ -0.21
Traf1P39428 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 AC153929.1-201ENSMUST00000219009 303 ntBASIC13.76□□□□□ -0.21
Traf1P39428 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.76□□□□□ -0.21
Traf1P39428 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
Traf1P39428 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.76□□□□□ -0.21
Traf1P39428 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC13.76□□□□□ -0.21
Traf1P39428 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Traf1P39428 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
Traf1P39428 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Gm15131-201ENSMUST00000119124 595 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Gm15207-201ENSMUST00000119259 442 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Gm12176-201ENSMUST00000121420 875 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC13.75□□□□□ -0.21
Traf1P39428 Gm10051-201ENSMUST00000145209 414 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Gm6397-201ENSMUST00000161973 1069 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.75□□□□□ -0.21
Traf1P39428 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Traf1P39428 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC13.75□□□□□ -0.21
Traf1P39428 Gm45575-201ENSMUST00000210283 548 ntBASIC13.75□□□□□ -0.21
Traf1P39428 AC154290.1-201ENSMUST00000223786 1240 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Gm7551-201ENSMUST00000089593 1074 ntBASIC13.75□□□□□ -0.21
Traf1P39428 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Traf1P39428 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.75□□□□□ -0.21
Traf1P39428 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Traf1P39428 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.75□□□□□ -0.21
Traf1P39428 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Traf1P39428 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Traf1P39428 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC13.74□□□□□ -0.21
Traf1P39428 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC13.74□□□□□ -0.21
Traf1P39428 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 AC113082.1-201ENSMUST00000217324 327 ntBASIC13.74□□□□□ -0.21
Traf1P39428 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC13.74□□□□□ -0.21
Traf1P39428 Gm18556-201ENSMUST00000219748 1031 ntBASIC13.74□□□□□ -0.21
Traf1P39428 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Traf1P39428 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms