Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Vti1aO89116 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Vti1aO89116 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vti1aO89116 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vti1aO89116 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vti1aO89116 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vti1aO89116 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Vti1aO89116 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm11667-201ENSMUST00000119828 486 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 Gm4607-201ENSMUST00000206649 577 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Vti1aO89116 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Pck2-205ENSMUST00000226352 2784 ntBASIC12.83□□□□□ -0.36
Vti1aO89116 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC12.83□□□□□ -0.36
Vti1aO89116 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vti1aO89116 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Vti1aO89116 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Vti1aO89116 Gm12208-201ENSMUST00000122004 163 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Gm43916-201ENSMUST00000205062 967 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 AC166992.1-201ENSMUST00000216356 565 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.82□□□□□ -0.36
Vti1aO89116 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vti1aO89116 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vti1aO89116 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms