Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lima1Q9ERG0 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm6023-201ENSMUST00000118217 606 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm12058-201ENSMUST00000118614 437 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Trav4d-2-201ENSMUST00000120914 335 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm10076-201ENSMUST00000073238 384 ntBASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lima1Q9ERG0 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm3836-201ENSMUST00000211377 1613 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm24830-201ENSMUST00000102024 166 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm12957-201ENSMUST00000117835 377 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm8062-201ENSMUST00000139696 444 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm45880-201ENSMUST00000213041 853 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gm26232-201ENSMUST00000083360 166 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Lima1Q9ERG0 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Lima1Q9ERG0 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Lima1Q9ERG0 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms