Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm5860-202ENSMUST00000151038 1711 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm37644-201ENSMUST00000192190 2270 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 AC126799.1-201ENSMUST00000221976 246 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.54□□□□□ -0.4
Clp1Q99LI9 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.54□□□□□ -0.4
Clp1Q99LI9 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm12783-201ENSMUST00000121425 397 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm18463-201ENSMUST00000207258 474 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm18460-201ENSMUST00000208088 464 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.53□□□□□ -0.4
Clp1Q99LI9 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Clp1Q99LI9 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Clp1Q99LI9 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Clp1Q99LI9 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clp1Q99LI9 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clp1Q99LI9 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clp1Q99LI9 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Clp1Q99LI9 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms