Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm2606-201ENSMUST00000100754 1002 ntBASIC12.54□□□□□ -0.4
Usp11Q99K46 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm12286-201ENSMUST00000119246 1002 ntBASIC12.54□□□□□ -0.4
Usp11Q99K46 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Gm42599-201ENSMUST00000201308 469 ntBASIC12.54□□□□□ -0.4
Usp11Q99K46 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp11Q99K46 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp11Q99K46 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 Gm8885-201ENSMUST00000189382 598 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 AC126253.1-202ENSMUST00000226732 835 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Gm10312-201ENSMUST00000078515 489 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Usp11Q99K46 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp11Q99K46 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.53□□□□□ -0.4
Usp11Q99K46 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp11Q99K46 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Usp11Q99K46 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp11Q99K46 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp11Q99K46 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.52□□□□□ -0.41
Usp11Q99K46 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.52□□□□□ -0.41
Usp11Q99K46 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm25668-201ENSMUST00000157700 129 ntBASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm27046-201ENSMUST00000182160 463 ntBASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp11Q99K46 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Gm18615-201ENSMUST00000222919 1031 ntBASIC12.52□□□□□ -0.41
Usp11Q99K46 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp11Q99K46 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms