Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm7551-201ENSMUST00000089593 1074 ntBASIC14□□□□□ -0.17
Trim56Q80VI1 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Trim56Q80VI1 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trim56Q80VI1 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim56Q80VI1 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Gm42943-201ENSMUST00000199676 3242 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Gm7940-201ENSMUST00000218195 769 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim56Q80VI1 Gm43760-201ENSMUST00000202120 3015 ntBASIC13.99□□□□□ -0.17
Trim56Q80VI1 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm13809-201ENSMUST00000117921 597 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm5380-201ENSMUST00000119296 2136 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm11331-201ENSMUST00000119764 288 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm37835-201ENSMUST00000193305 361 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm38314-201ENSMUST00000195709 625 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm43138-201ENSMUST00000199123 708 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm44100-201ENSMUST00000204329 436 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Ntng1-201ENSMUST00000051253 327 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Paupar-201ENSMUST00000194826 3482 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trim56Q80VI1 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim56Q80VI1 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.98□□□□□ -0.17
Trim56Q80VI1 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms