Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC10.46□□□□□ -0.74
Snrnp40Q6PE01 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm28323-201ENSMUST00000186817 2499 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Rab3c-202ENSMUST00000223922 2398 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm8155-201ENSMUST00000216363 1612 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm45199-201ENSMUST00000207640 1507 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm12783-201ENSMUST00000121425 397 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm10169-201ENSMUST00000121822 348 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Mir6923-201ENSMUST00000184592 72 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm28937-201ENSMUST00000185413 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm29400-201ENSMUST00000187208 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm28662-201ENSMUST00000188446 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm28251-201ENSMUST00000188835 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm37318-201ENSMUST00000194325 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm38017-201ENSMUST00000194768 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm37826-201ENSMUST00000195329 322 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm37287-201ENSMUST00000195449 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm37793-201ENSMUST00000195548 695 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm3726-201ENSMUST00000203110 785 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm23105-201ENSMUST00000083719 134 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm45706-201ENSMUST00000213063 2136 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Gm44942-201ENSMUST00000096093 2072 ntBASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Snrnp40Q6PE01 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Gm11244-201ENSMUST00000121243 237 ntBASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Gm5257-201ENSMUST00000121823 790 ntBASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Gm26047-201ENSMUST00000157308 113 ntBASIC10.44□□□□□ -0.74
Snrnp40Q6PE01 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms