Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col11a1Q61245 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col11a1Q61245 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.05□□□□□ -0.32
Col11a1Q61245 Gm12912-201ENSMUST00000121596 1381 ntBASIC13.05□□□□□ -0.32
Col11a1Q61245 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col11a1Q61245 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col11a1Q61245 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col11a1Q61245 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm22344-201ENSMUST00000122642 278 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm18733-202ENSMUST00000174447 401 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 AC152169.1-201ENSMUST00000223901 701 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 AC129975.1-201ENSMUST00000224816 592 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 AC154436.1-201ENSMUST00000227272 782 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Cenpx-201ENSMUST00000026137 692 ntTSL 2 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col11a1Q61245 Olfml3-204ENSMUST00000169286 874 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Mir6953-201ENSMUST00000184745 68 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC13.04□□□□□ -0.32
Col11a1Q61245 CT010480.2-201ENSMUST00000225424 737 ntBASIC13.04□□□□□ -0.32
Col11a1Q61245 Olfr435-201ENSMUST00000058118 942 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Col11a1Q61245 AU016765-201ENSMUST00000097295 946 ntTSL 2 BASIC13.04□□□□□ -0.32
Col11a1Q61245 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Col11a1Q61245 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm5171-201ENSMUST00000214944 1415 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm45605-201ENSMUST00000210265 4269 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm8522-201ENSMUST00000118416 1929 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm7841-201ENSMUST00000122108 1629 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm23745-201ENSMUST00000104230 125 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm9133-201ENSMUST00000118289 540 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm8019-201ENSMUST00000119317 587 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 AC164429.1-201ENSMUST00000224210 518 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Lect2-202ENSMUST00000225183 823 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col11a1Q61245 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col11a1Q61245 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col11a1Q61245 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.03□□□□□ -0.32
Col11a1Q61245 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col11a1Q61245 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms