Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm26660-202ENSMUST00000223620 4112 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm23912-201ENSMUST00000104687 87 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm12314-201ENSMUST00000118104 538 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm8018-201ENSMUST00000173536 789 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm7067-201ENSMUST00000207698 1249 ntBASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trim40Q3UWA4 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm43002-201ENSMUST00000200310 155 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm44415-201ENSMUST00000204151 2112 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm43937-201ENSMUST00000204640 3122 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Gm7964-201ENSMUST00000051522 1378 ntBASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim40Q3UWA4 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms