Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Mir671-201ENSMUST00000102432 98 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm26286-201ENSMUST00000104166 134 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm14193-201ENSMUST00000105067 153 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC10.18□□□□□ -0.78
Col8a1Q00780 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC10.18□□□□□ -0.78
Col8a1Q00780 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm26989-201ENSMUST00000182608 749 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm43752-201ENSMUST00000198475 697 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm44958-201ENSMUST00000203734 736 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 CT485606.1-201ENSMUST00000213187 878 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ap3s1-202ENSMUST00000224622 978 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 AC134860.1-201ENSMUST00000224867 660 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC10.18□□□□□ -0.78
Col8a1Q00780 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Col8a1Q00780 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Col8a1Q00780 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 AC171277.1-201ENSMUST00000216902 1441 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm43463-201ENSMUST00000195967 1803 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 AC116503.1-201ENSMUST00000215445 2192 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm12579-201ENSMUST00000118040 783 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm11979-201ENSMUST00000119629 743 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm18201-201ENSMUST00000174735 875 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm18367-201ENSMUST00000176139 600 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC10.17□□□□□ -0.78
Col8a1Q00780 Mir6407-201ENSMUST00000184510 101 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Gm18499-201ENSMUST00000220808 1021 ntBASIC10.17□□□□□ -0.78
Col8a1Q00780 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Col8a1Q00780 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms