Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Ccdc130-201ENSMUST00000005120 1441 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Col18a1P39061 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC15.37■□□□□ 0.05
Col18a1P39061 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col18a1P39061 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col18a1P39061 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC15.36■□□□□ 0.05
Col18a1P39061 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm38103-201ENSMUST00000191707 864 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm5190-201ENSMUST00000192434 357 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm43117-201ENSMUST00000198531 379 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm44420-201ENSMUST00000203669 490 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm44640-201ENSMUST00000206894 247 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm45258-201ENSMUST00000210042 853 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col18a1P39061 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm6560-201ENSMUST00000198588 1591 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Col18a1P39061 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm37160-201ENSMUST00000193081 1689 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Igll1-201ENSMUST00000100136 870 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col18a1P39061 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm15626-201ENSMUST00000117478 868 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm5944-201ENSMUST00000118182 1001 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm7880-201ENSMUST00000203748 871 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Gm3926-201ENSMUST00000223378 1123 ntBASIC15.36■□□□□ 0.05
Col18a1P39061 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Col18a1P39061 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
Col18a1P39061 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Col18a1P39061 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col18a1P39061 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Col18a1P39061 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 CT010480.4-201ENSMUST00000224654 2283 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Col18a1P39061 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Gm13426-201ENSMUST00000117887 795 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 Gm12028-201ENSMUST00000118065 436 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 Gm11380-201ENSMUST00000118067 560 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Gm4705-201ENSMUST00000177415 354 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 Kif4-ps-202ENSMUST00000185083 652 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 2810049E08Rik-201ENSMUST00000185600 1102 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC15.35■□□□□ 0.05
Col18a1P39061 AC116797.2-202ENSMUST00000223587 1017 ntBASIC15.35■□□□□ 0.05
Col18a1P39061 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Ap5s1-203ENSMUST00000110208 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Prim2-201ENSMUST00000027312 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Col18a1P39061 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC15.35■□□□□ 0.05
Col18a1P39061 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col18a1P39061 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col18a1P39061 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.34■□□□□ 0.05
Col18a1P39061 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Col18a1P39061 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
Col18a1P39061 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Ndufb5-202ENSMUST00000121778 574 ntTSL 3 BASIC15.34■□□□□ 0.05
Col18a1P39061 Tcstv1-201ENSMUST00000178510 1280 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col18a1P39061 4930402C01Rik-201ENSMUST00000192586 663 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC15.34■□□□□ 0.05
Col18a1P39061 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col18a1P39061 AC125108.1-201ENSMUST00000218986 2330 ntBASIC15.34■□□□□ 0.05
Col18a1P39061 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms