Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col1a1P11087 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col1a1P11087 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC13.75□□□□□ -0.21
Col1a1P11087 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm23612-201ENSMUST00000103823 110 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm15528-201ENSMUST00000117821 864 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Gm12712-201ENSMUST00000120676 801 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC13.75□□□□□ -0.21
Col1a1P11087 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm23576-201ENSMUST00000179918 110 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Ighv1-2-201ENSMUST00000195325 378 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Gm44216-201ENSMUST00000203942 157 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC13.75□□□□□ -0.21
Col1a1P11087 Arhgef33-207ENSMUST00000224966 490 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Col1a1P11087 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm8522-201ENSMUST00000118416 1929 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.75□□□□□ -0.21
Col1a1P11087 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Col1a1P11087 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col1a1P11087 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Col1a1P11087 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm15620-201ENSMUST00000122949 270 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm25830-201ENSMUST00000158923 132 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 Gm16167-201ENSMUST00000160428 1065 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm34379-201ENSMUST00000195036 290 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Gm2594-201ENSMUST00000214774 742 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 BC106175-202ENSMUST00000219344 1213 ntBASIC13.74□□□□□ -0.21
Col1a1P11087 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Col1a1P11087 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Col1a1P11087 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.74□□□□□ -0.21
Col1a1P11087 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.74□□□□□ -0.21
Col1a1P11087 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.74□□□□□ -0.21
Col1a1P11087 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col1a1P11087 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms