Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Btrc-209ENSMUST00000224478 2194 ntBASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim39Q9ESN2 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm12742-201ENSMUST00000117326 410 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Rpf2-206ENSMUST00000183309 1296 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm27572-201ENSMUST00000183702 255 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm38002-201ENSMUST00000193255 180 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.23□□□□□ -0.61
Trim39Q9ESN2 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim39Q9ESN2 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm13315-201ENSMUST00000120376 991 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm11597-201ENSMUST00000121423 964 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm9630-201ENSMUST00000178304 885 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Ap1g1-206ENSMUST00000179104 1096 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm29013-201ENSMUST00000187431 237 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm5850-201ENSMUST00000192923 1206 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm37931-201ENSMUST00000194686 2866 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gm45930-201ENSMUST00000221330 292 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim39Q9ESN2 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms