Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Mir5132-201ENSMUST00000175166 71 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gm4157-201ENSMUST00000211647 679 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gm270-201ENSMUST00000223010 976 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Gm26448-201ENSMUST00000082446 203 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Map1b-203ENSMUST00000223725 2669 ntBASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Vps28Q9D1C8 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Gm25732-201ENSMUST00000175168 60 ntBASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Vps28Q9D1C8 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Vps28Q9D1C8 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm26286-201ENSMUST00000104166 134 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gm807-202ENSMUST00000224929 408 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Vps28Q9D1C8 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms