Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Gm42498-201ENSMUST00000199981 1372 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Gm9083-201ENSMUST00000120423 819 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Gm9630-201ENSMUST00000178304 885 ntBASIC13.37□□□□□ -0.27
Smc1aQ9CU62 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.37□□□□□ -0.27
Smc1aQ9CU62 AC154404.1-201ENSMUST00000223601 2077 ntBASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Gm43868-201ENSMUST00000205187 2114 ntBASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Gm13996-201ENSMUST00000118456 430 ntBASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Gm6211-201ENSMUST00000147973 4275 ntBASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Smc1aQ9CU62 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm13296-201ENSMUST00000117854 997 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm11331-201ENSMUST00000119764 288 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm8018-201ENSMUST00000173536 789 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm36987-201ENSMUST00000194704 2979 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm8959-201ENSMUST00000213150 571 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 CU062626.3-201ENSMUST00000225522 1411 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Gm10110-202ENSMUST00000228705 3220 ntBASIC13.35□□□□□ -0.27
Smc1aQ9CU62 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Smc1aQ9CU62 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms