Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm26047-201ENSMUST00000157308 113 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm26047-202ENSMUST00000198840 115 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm3726-201ENSMUST00000203110 785 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 AC114645.1-201ENSMUST00000215831 187 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm6722-201ENSMUST00000221586 390 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 AC122346.3-201ENSMUST00000223983 306 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gemin6-201ENSMUST00000069486 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm23105-201ENSMUST00000083719 134 ntBASIC12.56□□□□□ -0.4
Clp1Q99LI9 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clp1Q99LI9 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm13117-201ENSMUST00000120894 691 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm4862-201ENSMUST00000170405 438 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm5621-201ENSMUST00000187303 640 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Clp1Q99LI9 Gm17213-201ENSMUST00000165161 1360 ntBASIC12.55□□□□□ -0.4
Clp1Q99LI9 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms