Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 AC164107.1-201ENSMUST00000227730 2161 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm38194-201ENSMUST00000194529 2211 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm11439-201ENSMUST00000118598 409 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm6114-201ENSMUST00000182472 968 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm27341-201ENSMUST00000183570 106 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Mir7677-201ENSMUST00000184226 67 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm26448-201ENSMUST00000082446 203 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Gm8146-201ENSMUST00000192106 1847 ntBASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Brf1Q8CFK2 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Brf1Q8CFK2 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm28686-201ENSMUST00000187404 609 ntBASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm38228-201ENSMUST00000193169 1293 ntBASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm807-202ENSMUST00000224929 408 ntBASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Mir433-201ENSMUST00000093564 124 ntBASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Brf1Q8CFK2 Gm18986-201ENSMUST00000216029 1986 ntBASIC14.33□□□□□ -0.12
Brf1Q8CFK2 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Brf1Q8CFK2 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms