Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Gm44152-201ENSMUST00000205007 1691 ntBASIC14.02□□□□□ -0.16
Limch1Q3UH68 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Limch1Q3UH68 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm14644-201ENSMUST00000116671 647 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm15610-201ENSMUST00000120584 195 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm17040-202ENSMUST00000170597 889 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm17812-201ENSMUST00000204935 318 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm25007-201ENSMUST00000083808 133 ntBASIC14.02□□□□□ -0.17
Limch1Q3UH68 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Limch1Q3UH68 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm43760-201ENSMUST00000202120 3015 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm42829-201ENSMUST00000198417 2585 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm9796-201ENSMUST00000062249 2250 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm12266-201ENSMUST00000120311 962 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm12164-201ENSMUST00000121695 551 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm44100-201ENSMUST00000204329 436 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm17931-201ENSMUST00000208132 634 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm45598-202ENSMUST00000210719 986 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm18730-201ENSMUST00000218038 343 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 AC154680.1-201ENSMUST00000224376 859 ntBASIC14.01□□□□□ -0.17
Limch1Q3UH68 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Limch1Q3UH68 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Limch1Q3UH68 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Limch1Q3UH68 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC14□□□□□ -0.17
Limch1Q3UH68 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC14□□□□□ -0.17
Limch1Q3UH68 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC14□□□□□ -0.17
Limch1Q3UH68 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14□□□□□ -0.17
Limch1Q3UH68 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Limch1Q3UH68 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Limch1Q3UH68 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Limch1Q3UH68 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms