Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Adgrl2-208ENSMUST00000197567 5585 ntAPPRIS P2 TSL 2 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Snord83b-201ENSMUST00000104546 94 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Mir6392-201ENSMUST00000184924 108 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm28631-201ENSMUST00000190740 334 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm38671-201ENSMUST00000200573 130 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm44855-201ENSMUST00000205725 362 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm3365-201ENSMUST00000216296 1480 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Hmgb3O54879 Gm7537-201ENSMUST00000221660 1414 ntBASIC9.82□□□□□ -0.84
Hmgb3O54879 Flg2-201ENSMUST00000098884 7011 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Hmgb3O54879 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Papln-201ENSMUST00000021646 4260 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Cacna1c-202ENSMUST00000078320 8062 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Dysf-215ENSMUST00000204591 6641 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm15897-201ENSMUST00000117770 1486 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 AC124397.2-201ENSMUST00000225575 2215 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Ahrr-201ENSMUST00000022059 4754 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm13369-201ENSMUST00000119442 987 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm27243-201ENSMUST00000183964 521 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm44772-201ENSMUST00000207623 1191 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 AC154687.2-201ENSMUST00000223853 640 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm24136-201ENSMUST00000083374 165 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Rnf216-201ENSMUST00000053498 4474 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Enah-211ENSMUST00000193703 11229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Hecw2-201ENSMUST00000087659 11171 ntAPPRIS P1 TSL 5 BASIC9.81□□□□□ -0.84
Hmgb3O54879 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm37969-201ENSMUST00000195777 3409 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Gm37931-201ENSMUST00000194686 2866 ntBASIC9.81□□□□□ -0.84
Hmgb3O54879 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Wdfy3-201ENSMUST00000053177 14274 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Umodl1-203ENSMUST00000114555 5041 ntAPPRIS P2 TSL 5 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Erc2-205ENSMUST00000210135 6233 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Dysf-203ENSMUST00000113818 6571 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Hmgb3O54879 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC9.8□□□□□ -0.84
Hmgb3O54879 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC9.8□□□□□ -0.84
Hmgb3O54879 Gm37660-201ENSMUST00000192754 1732 ntBASIC9.8□□□□□ -0.84
Hmgb3O54879 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms