Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm13549-201ENSMUST00000118339 796 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Gm25545-201ENSMUST00000122673 323 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC10.87□□□□□ -0.67
Usf1Q61069 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Ighv2-1-201ENSMUST00000170946 353 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Gm9034-201ENSMUST00000182071 1005 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Mir6923-201ENSMUST00000184592 72 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm7959-201ENSMUST00000221823 1078 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Gm4604-201ENSMUST00000025040 390 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Usf1Q61069 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Gm5451-201ENSMUST00000080545 579 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
Usf1Q61069 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Mbnl2-204ENSMUST00000227012 2390 ntBASIC10.87□□□□□ -0.67
Usf1Q61069 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Usf1Q61069 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Usf1Q61069 Gm3052-202ENSMUST00000188254 2224 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 AC154262.2-202ENSMUST00000225158 1331 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC10.86□□□□□ -0.67
Usf1Q61069 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm37513-201ENSMUST00000194830 2268 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Gm38378-201ENSMUST00000195153 2268 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm23272-201ENSMUST00000104053 129 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Gm12419-201ENSMUST00000116649 636 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Gm5257-201ENSMUST00000121823 790 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Usf1Q61069 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC10.86□□□□□ -0.67
Usf1Q61069 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm44315-201ENSMUST00000203041 219 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm45410-201ENSMUST00000211331 1093 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Gm6722-201ENSMUST00000221586 390 ntBASIC10.86□□□□□ -0.67
Usf1Q61069 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Usf1Q61069 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Usf1Q61069 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Usf1Q61069 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 117.4 ms