Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Gm28071-201ENSMUST00000190355 478 ntBASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Gm7003-201ENSMUST00000195089 312 ntBASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3bQ3ULL6 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm2260-201ENSMUST00000184965 657 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm35960-201ENSMUST00000202712 767 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Mir433-201ENSMUST00000093564 124 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3bQ3ULL6 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm23949-201ENSMUST00000104027 127 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm15711-201ENSMUST00000118889 535 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms