Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm24749-201ENSMUST00000157838 343 ntBASIC14.05□□□□□ -0.16
Limch1Q3UH68 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm27552-201ENSMUST00000183351 62 ntBASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm27844-201ENSMUST00000183613 62 ntBASIC14.05□□□□□ -0.16
Limch1Q3UH68 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.05□□□□□ -0.16
Limch1Q3UH68 Aprt-ps-201ENSMUST00000212311 505 ntBASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Limch1Q3UH68 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.04□□□□□ -0.16
Limch1Q3UH68 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gm20426-201ENSMUST00000173657 440 ntBASIC14.04□□□□□ -0.16
Limch1Q3UH68 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gm8546-201ENSMUST00000178288 1264 ntBASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gm32999-201ENSMUST00000192693 562 ntBASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gm9136-201ENSMUST00000193368 454 ntBASIC14.04□□□□□ -0.16
Limch1Q3UH68 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Limch1Q3UH68 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gm29787-201ENSMUST00000222129 849 ntBASIC14.03□□□□□ -0.16
Limch1Q3UH68 AC154252.2-201ENSMUST00000223593 767 ntBASIC14.03□□□□□ -0.16
Limch1Q3UH68 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.03□□□□□ -0.16
Limch1Q3UH68 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Limch1Q3UH68 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms