Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm6023-201ENSMUST00000118217 606 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm13492-201ENSMUST00000119772 665 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm14381-201ENSMUST00000122105 414 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm17376-201ENSMUST00000166016 84 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm3786-201ENSMUST00000202659 378 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm19163-201ENSMUST00000223313 780 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Cldn12-201ENSMUST00000060947 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm13297-201ENSMUST00000120205 934 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm13315-201ENSMUST00000120376 991 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm12363-201ENSMUST00000122250 668 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm37489-201ENSMUST00000191883 159 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm18753-201ENSMUST00000201000 566 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm6082-201ENSMUST00000215204 454 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Col28a1Q2UY11 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 BC043934-202ENSMUST00000185694 2356 ntBASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Mir7070-201ENSMUST00000183657 86 ntBASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm44958-201ENSMUST00000203734 736 ntBASIC11.59□□□□□ -0.55
Col28a1Q2UY11 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms