Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 AC122314.1-201ENSMUST00000223056 2239 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Gm12943-201ENSMUST00000119616 210 ntBASIC10.21□□□□□ -0.77
Col8a1Q00780 Gm11836-201ENSMUST00000121022 441 ntBASIC10.21□□□□□ -0.77
Col8a1Q00780 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC10.21□□□□□ -0.77
Col8a1Q00780 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Gm9116-201ENSMUST00000192400 1018 ntBASIC10.21□□□□□ -0.77
Col8a1Q00780 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 CT009738.1-201ENSMUST00000219031 809 ntBASIC10.21□□□□□ -0.77
Col8a1Q00780 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Col8a1Q00780 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Col8a1Q00780 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Col8a1Q00780 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC10.21□□□□□ -0.78
Col8a1Q00780 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Gm9361-201ENSMUST00000198695 1507 ntBASIC10.21□□□□□ -0.78
Col8a1Q00780 Gm19680-201ENSMUST00000095050 1513 ntBASIC10.21□□□□□ -0.78
Col8a1Q00780 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Col8a1Q00780 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC10.2□□□□□ -0.78
Col8a1Q00780 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC10.2□□□□□ -0.78
Col8a1Q00780 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Gm15703-201ENSMUST00000120250 880 ntBASIC10.2□□□□□ -0.78
Col8a1Q00780 Gm13394-201ENSMUST00000121658 1000 ntBASIC10.2□□□□□ -0.78
Col8a1Q00780 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Col8a1Q00780 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Col8a1Q00780 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms