Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Gm2606-201ENSMUST00000100754 1002 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Gm10434-201ENSMUST00000101158 471 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Gm12286-201ENSMUST00000119246 1002 ntBASIC12.51□□□□□ -0.41
Usp4P35123 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.51□□□□□ -0.41
Usp4P35123 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 AC126253.1-202ENSMUST00000226732 835 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Usp4P35123 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Usp4P35123 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Gm15991-202ENSMUST00000212123 3565 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Gm11222-201ENSMUST00000119005 738 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Usp4P35123 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Usp4P35123 Gm38158-201ENSMUST00000194617 339 ntBASIC12.5□□□□□ -0.41
Usp4P35123 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Usp4P35123 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 AC125209.1-201ENSMUST00000225812 766 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Usp4P35123 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Usp4P35123 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
Usp4P35123 Gm6189-201ENSMUST00000164487 2082 ntBASIC12.5□□□□□ -0.41
Usp4P35123 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Usp4P35123 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usp4P35123 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Usp4P35123 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Usp4P35123 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usp4P35123 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Usp4P35123 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms