Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm30671-201ENSMUST00000214898 318 ntBASIC13.96□□□□□ -0.18
Scn11aQ9R053 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC13.96□□□□□ -0.18
Scn11aQ9R053 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC13.96□□□□□ -0.18
Scn11aQ9R053 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm25063-201ENSMUST00000104666 94 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm15528-201ENSMUST00000117821 864 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm25998-201ENSMUST00000175397 53 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm8531-201ENSMUST00000188319 893 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Gm5641-201ENSMUST00000091130 1488 ntBASIC13.95□□□□□ -0.18
Scn11aQ9R053 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Scn11aQ9R053 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 AC165351.1-201ENSMUST00000219078 2020 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm20414-201ENSMUST00000172918 646 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm26989-201ENSMUST00000182608 749 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm43854-201ENSMUST00000200418 394 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm45592-201ENSMUST00000209605 1043 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm11500-201ENSMUST00000118237 601 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm7741-201ENSMUST00000181445 989 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm43002-201ENSMUST00000200310 155 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm44647-201ENSMUST00000207402 428 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm10254-201ENSMUST00000052888 867 ntBASIC13.94□□□□□ -0.18
Scn11aQ9R053 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
Scn11aQ9R053 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.93□□□□□ -0.18
Scn11aQ9R053 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Scn11aQ9R053 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms