Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 CK137956-201ENSMUST00000030614 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Phtf1os-201ENSMUST00000160110 4046 ntBASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Rrp8-202ENSMUST00000098148 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Slc14a2-201ENSMUST00000025434 2793 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Celf3-215ENSMUST00000200342 3173 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Dlgap2-208ENSMUST00000150247 3138 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Acss3-203ENSMUST00000165067 4696 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Trem1Q9JKE2 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Traf1-207ENSMUST00000172159 3436 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gm29245-201ENSMUST00000187332 1416 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gm18630-201ENSMUST00000222109 1397 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Ehmt1-205ENSMUST00000114432 4539 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 N6amt1-204ENSMUST00000120284 3473 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gm11978-201ENSMUST00000122315 466 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gm21854-201ENSMUST00000179901 471 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gm26780-201ENSMUST00000180748 2495 ntTSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Rcan2-201ENSMUST00000044792 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Abhd6-203ENSMUST00000225234 1958 ntBASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Cd1d1-201ENSMUST00000029717 1946 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Myo1a-201ENSMUST00000079590 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Trem1Q9JKE2 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm9755-201ENSMUST00000032981 1356 ntBASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ppil2-201ENSMUST00000023455 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm2213-201ENSMUST00000197485 688 ntBASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm43514-201ENSMUST00000198852 424 ntBASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Slx1b-203ENSMUST00000144897 3152 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Grpr-201ENSMUST00000033730 2523 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Olfr478-202ENSMUST00000210173 2477 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ctc1-211ENSMUST00000161455 3989 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Scnn1a-201ENSMUST00000081440 3499 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Trem1Q9JKE2 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms