Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Ubp1Q811S7 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 AC154806.5-202ENSMUST00000227217 1443 ntBASIC11.86□□□□□ -0.51
Ubp1Q811S7 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Ubp1Q811S7 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm14130-201ENSMUST00000118417 987 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm14363-201ENSMUST00000122304 409 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.85□□□□□ -0.51
Ubp1Q811S7 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Ubp1Q811S7 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.84□□□□□ -0.51
Ubp1Q811S7 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Atp6v1c2-207ENSMUST00000156727 1279 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Ubp1Q811S7 Rian-215ENSMUST00000183180 633 ntTSL 5 BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 91.7 ms