Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm18730-201ENSMUST00000218038 343 ntBASIC12.04□□□□□ -0.48
Six4Q61321 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.04□□□□□ -0.48
Six4Q61321 Gm807-202ENSMUST00000224929 408 ntBASIC12.04□□□□□ -0.48
Six4Q61321 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Six4Q61321 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Six4Q61321 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Six4Q61321 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Six4Q61321 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.03□□□□□ -0.48
Six4Q61321 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.03□□□□□ -0.48
Six4Q61321 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.03□□□□□ -0.48
Six4Q61321 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
Six4Q61321 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.03□□□□□ -0.48
Six4Q61321 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC12.03□□□□□ -0.48
Six4Q61321 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.03□□□□□ -0.48
Six4Q61321 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.03□□□□□ -0.48
Six4Q61321 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Gm28686-201ENSMUST00000187404 609 ntBASIC12.03□□□□□ -0.48
Six4Q61321 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.03□□□□□ -0.48
Six4Q61321 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Six4Q61321 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Six4Q61321 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.02□□□□□ -0.48
Six4Q61321 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
Six4Q61321 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.02□□□□□ -0.48
Six4Q61321 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Six4Q61321 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Six4Q61321 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Gm15515-201ENSMUST00000117827 822 ntBASIC12.02□□□□□ -0.49
Six4Q61321 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.02□□□□□ -0.49
Six4Q61321 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Six4Q61321 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.02□□□□□ -0.49
Six4Q61321 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.02□□□□□ -0.49
Six4Q61321 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.02□□□□□ -0.49
Six4Q61321 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.02□□□□□ -0.49
Six4Q61321 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Six4Q61321 Gm6114-201ENSMUST00000182472 968 ntBASIC12.02□□□□□ -0.49
Six4Q61321 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Six4Q61321 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.02□□□□□ -0.49
Six4Q61321 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.02□□□□□ -0.49
Six4Q61321 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms