Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm26286-201ENSMUST00000104166 134 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm14017-201ENSMUST00000121934 386 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm24749-201ENSMUST00000157838 343 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm18212-201ENSMUST00000211678 889 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm17827-201ENSMUST00000211825 742 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Upf3bQ3ULL6 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm2383-201ENSMUST00000181461 807 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm37666-201ENSMUST00000194110 866 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm8385-201ENSMUST00000058999 643 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3bQ3ULL6 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.77□□□□□ -0.36
Upf3bQ3ULL6 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms