Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm8522-201ENSMUST00000118416 1929 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Mir3547-201ENSMUST00000175461 88 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm6621-201ENSMUST00000193251 772 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm38158-201ENSMUST00000194617 339 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Mettl6-204ENSMUST00000227595 1027 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gm24255-201ENSMUST00000104481 128 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col28a1Q2UY11 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Gm5859-201ENSMUST00000165401 2324 ntBASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Col28a1Q2UY11 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms