Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC13.84□□□□□ -0.19
Col1a1P11087 Gm9415-201ENSMUST00000200462 1321 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Gm16219-201ENSMUST00000120096 274 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC13.84□□□□□ -0.19
Col1a1P11087 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Gm40879-201ENSMUST00000220759 612 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Gm5468-202ENSMUST00000227851 682 ntBASIC13.84□□□□□ -0.19
Col1a1P11087 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Col1a1P11087 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Col1a1P11087 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col1a1P11087 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Col1a1P11087 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col1a1P11087 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Col1a1P11087 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm12194-201ENSMUST00000117756 1012 ntBASIC13.83□□□□□ -0.2
Col1a1P11087 Gm12179-201ENSMUST00000118344 1272 ntBASIC13.83□□□□□ -0.2
Col1a1P11087 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13.83□□□□□ -0.2
Col1a1P11087 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Gm7719-201ENSMUST00000182374 975 ntBASIC13.83□□□□□ -0.2
Col1a1P11087 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 CT030170.2-201ENSMUST00000223267 126 ntBASIC13.83□□□□□ -0.2
Col1a1P11087 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.83□□□□□ -0.2
Col1a1P11087 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Col1a1P11087 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.82□□□□□ -0.2
Col1a1P11087 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm12663-201ENSMUST00000118481 958 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 Gm13019-201ENSMUST00000120000 276 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 Gm14993-201ENSMUST00000121180 164 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC13.82□□□□□ -0.2
Col1a1P11087 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm5870-201ENSMUST00000196461 282 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 Gm5996-201ENSMUST00000211110 718 ntBASIC13.82□□□□□ -0.2
Col1a1P11087 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Col1a1P11087 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col1a1P11087 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col1a1P11087 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm15172-201ENSMUST00000118945 1046 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm15549-201ENSMUST00000121595 622 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Gm12453-201ENSMUST00000121981 331 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Mir1905-201ENSMUST00000122779 82 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC13.81□□□□□ -0.2
Col1a1P11087 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC13.81□□□□□ -0.2
Col1a1P11087 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms