Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Clrn1Q8K445 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm12036-201ENSMUST00000120008 530 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm26083-201ENSMUST00000157904 193 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Mir6420-201ENSMUST00000185032 102 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gm17931-201ENSMUST00000208132 634 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 AC154171.1-201ENSMUST00000224610 643 ntBASIC11.29□□□□□ -0.6
Clrn1Q8K445 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Clrn1Q8K445 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.28□□□□□ -0.6
Clrn1Q8K445 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm5419-201ENSMUST00000119301 527 ntBASIC11.28□□□□□ -0.6
Clrn1Q8K445 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm26361-201ENSMUST00000158868 186 ntBASIC11.28□□□□□ -0.6
Clrn1Q8K445 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm5706-201ENSMUST00000181525 993 ntBASIC11.28□□□□□ -0.6
Clrn1Q8K445 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.28□□□□□ -0.6
Clrn1Q8K445 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Clrn1Q8K445 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms