Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC16.36■□□□□ 0.21
Usp40Q8BWR4 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm19692-201ENSMUST00000203856 2084 ntBASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm6114-201ENSMUST00000182472 968 ntBASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm43830-201ENSMUST00000198760 1067 ntBASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 CT485606.1-201ENSMUST00000213187 878 ntBASIC16.35■□□□□ 0.21
Usp40Q8BWR4 AC122350.1-201ENSMUST00000228135 533 ntBASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC16.35■□□□□ 0.21
Usp40Q8BWR4 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Gm5982-201ENSMUST00000196234 512 ntBASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp40Q8BWR4 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp40Q8BWR4 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp40Q8BWR4 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Usp40Q8BWR4 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp40Q8BWR4 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp40Q8BWR4 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Mir1901-201ENSMUST00000122616 78 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm8194-201ENSMUST00000159783 859 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm10807-201ENSMUST00000177134 795 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm9358-201ENSMUST00000183067 927 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm3551-201ENSMUST00000190750 664 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm42599-201ENSMUST00000201308 469 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm8574-201ENSMUST00000203207 924 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm8342-201ENSMUST00000209839 757 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 AC132901.1-201ENSMUST00000224345 508 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 AC134869.4-202ENSMUST00000224350 837 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms