Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm6244-201ENSMUST00000178732 841 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm9136-201ENSMUST00000193368 454 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Ighv5-13-201ENSMUST00000193550 290 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 AC110817.1-201ENSMUST00000225706 605 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm3836-201ENSMUST00000211377 1613 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm21939-201ENSMUST00000221137 2773 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm11439-201ENSMUST00000118598 409 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm38114-201ENSMUST00000191877 1232 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm6745-201ENSMUST00000199216 526 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 CT030657.3-201ENSMUST00000222707 1200 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Gm19163-201ENSMUST00000223313 780 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Trim40Q3UWA4 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim40Q3UWA4 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm24830-201ENSMUST00000102024 166 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Mup-ps23-201ENSMUST00000118063 630 ntBASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms