Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm5419-201ENSMUST00000119301 527 ntBASIC14.22□□□□□ -0.13
Ercc3P49135 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Ercc3P49135 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm27627-201ENSMUST00000183644 150 ntBASIC14.22□□□□□ -0.13
Ercc3P49135 Gm18893-201ENSMUST00000198416 943 ntBASIC14.22□□□□□ -0.13
Ercc3P49135 CT571245.2-201ENSMUST00000218421 305 ntBASIC14.22□□□□□ -0.13
Ercc3P49135 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ercc3P49135 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC14.22□□□□□ -0.13
Ercc3P49135 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.21□□□□□ -0.13
Ercc3P49135 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.21□□□□□ -0.13
Ercc3P49135 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.21□□□□□ -0.13
Ercc3P49135 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.21□□□□□ -0.13
Ercc3P49135 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ercc3P49135 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ercc3P49135 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Ercc3P49135 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Gm43051-201ENSMUST00000201096 2678 ntBASIC14.21□□□□□ -0.13
Ercc3P49135 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ercc3P49135 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ercc3P49135 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ercc3P49135 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ercc3P49135 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ercc3P49135 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC14.21□□□□□ -0.14
Ercc3P49135 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Ercc3P49135 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ercc3P49135 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC14.2□□□□□ -0.14
Ercc3P49135 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ercc3P49135 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ercc3P49135 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC14.2□□□□□ -0.14
Ercc3P49135 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Ercc3P49135 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms