Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm22846-201ENSMUST00000157706 270 ntBASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 BC106175-202ENSMUST00000219344 1213 ntBASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm40879-201ENSMUST00000220759 612 ntBASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Nkx2-4Q9EQM3 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Nkx2-4Q9EQM3 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Mir6941-201ENSMUST00000184711 59 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Gm43912-201ENSMUST00000204352 538 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Gm7082-201ENSMUST00000209880 969 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 AC130477.1-201ENSMUST00000226982 420 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Nkx2-4Q9EQM3 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm15610-201ENSMUST00000120584 195 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm12712-201ENSMUST00000120676 801 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm20414-201ENSMUST00000172918 646 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 Gm9884-201ENSMUST00000194343 1222 ntBASIC12.26□□□□□ -0.45
Nkx2-4Q9EQM3 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms