Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm22594-201ENSMUST00000104251 130 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm11560-201ENSMUST00000117567 948 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Gm14892-201ENSMUST00000117636 267 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Gm12712-201ENSMUST00000120676 801 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Gm12164-201ENSMUST00000121695 551 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Sox9Q04887 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.41□□□□□ -0.42
Sox9Q04887 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm45135-201ENSMUST00000206787 1184 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm8342-201ENSMUST00000209839 757 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 AC158388.3-202ENSMUST00000225517 775 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Sox9Q04887 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Sox9Q04887 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC12.4□□□□□ -0.42
Sox9Q04887 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm24248-201ENSMUST00000157321 322 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm3150-201ENSMUST00000166418 204 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Sox9Q04887 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 CT030135.2-201ENSMUST00000225255 893 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Arhgef33-210ENSMUST00000225548 456 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Sox9Q04887 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.4□□□□□ -0.42
Sox9Q04887 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sox9Q04887 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Sox9Q04887 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Sox9Q04887 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Sox9Q04887 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Sox9Q04887 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.39□□□□□ -0.43
Sox9Q04887 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.39□□□□□ -0.43
Sox9Q04887 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sox9Q04887 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.39□□□□□ -0.43
Sox9Q04887 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms